Index

A

add_filenames_to_header() (tshirt.pipeline.phot_pipeline.phot method) adjacent_bin_ratio() (tshirt.pipeline.spec_pipeline.spec method) adjust_aperture_set() (in module tshirt.pipeline.analysis) adjust_apertures() (tshirt.pipeline.phot_pipeline.phot method)

align_dynamic_spectra() (tshirt.pipeline.spec_pipeline.spec method) allan_variance() (in module tshirt.pipeline.phot_pipeline) allTser() (in module tshirt.pipeline.phot_pipeline) aperture_size_sweep() (in module tshirt.pipeline.analysis)

B

backsub_list() (in module tshirt.pipeline.analysis) backsub_oneDir() (tshirt.pipeline.spec_pipeline.spec method)

batch_run() (tshirt.pipeline.phot_pipeline.batchPhot method) batch_spec (class in tshirt.pipeline.spec_pipeline) batchPhot (class in tshirt.pipeline.phot_pipeline)

C

calculate_apertures() (tshirt.pipeline.spec_pipeline.spec method) check_file_structure() (tshirt.pipeline.phot_pipeline.phot method) check_if_nonlin_needed() (tshirt.pipeline.prep_images.prep method)

check_trace_requirements() (tshirt.pipeline.spec_pipeline.spec method) col_by_col() (in module tshirt.pipeline.instrument_specific.rowamp_sub) compare_spectra() (in module tshirt.pipeline.spec_pipeline) crosscor_offset() (in module tshirt.pipeline.utils)

D

do_backsub() (in module tshirt.pipeline.instrument_specific.rowamp_sub) (tshirt.pipeline.spec_pipeline.spec method) do_binning() (in module tshirt.pipeline.phot_pipeline)

do_even_odd() (in module tshirt.pipeline.instrument_specific.rowamp_sub) do_extraction() (tshirt.pipeline.spec_pipeline.spec method) do_phot() (tshirt.pipeline.phot_pipeline.phot method)

E

ensure_coordinates_are_within_bounds() (in module tshirt.pipeline.phot_pipeline) ensure_directories_are_in_place() (in module tshirt.pipeline.phot_pipeline)

eval_trace() (tshirt.pipeline.spec_pipeline.spec method) exists_and_equal() (in module tshirt.pipeline.phot_pipeline)

F

find_profile() (tshirt.pipeline.spec_pipeline.spec method) find_px_bins_from_waves() (tshirt.pipeline.spec_pipeline.spec method) find_trace() (tshirt.pipeline.spec_pipeline.spec method) fit_trace() (tshirt.pipeline.spec_pipeline.spec method)

fix_centroids() (tshirt.pipeline.phot_pipeline.phot method) fix_pix_line() (tshirt.pipeline.prep_images.prep method) flatten() (in module tshirt.pipeline.utils) flight_poly_grismr_nc() (in module tshirt.pipeline.instrument_specific.jwst_inst_funcs)

G

get_allcen_img() (tshirt.pipeline.phot_pipeline.phot method) get_allimg_cen() (tshirt.pipeline.phot_pipeline.phot method) get_ap_area() (tshirt.pipeline.phot_pipeline.phot method) get_avg_spec() (tshirt.pipeline.spec_pipeline.spec method) get_centroid() (tshirt.pipeline.phot_pipeline.phot method) get_default_cen() (tshirt.pipeline.phot_pipeline.phot method) get_default_im() (tshirt.pipeline.phot_pipeline.phot method) get_default_index() (tshirt.pipeline.phot_pipeline.phot method) get_fileL() (tshirt.pipeline.prep_images.prep method)

get_fwhm() (tshirt.pipeline.phot_pipeline.phot method) get_median_img() (tshirt.pipeline.spec_pipeline.spec method) get_refSeries() (tshirt.pipeline.phot_pipeline.phot method) get_source_xy() (tshirt.pipeline.phot_pipeline.phot method) get_spec() (tshirt.pipeline.spec_pipeline.spec method) get_tSeries() (tshirt.pipeline.phot_pipeline.phot method) get_tshirt_example_data() (in module tshirt.pipeline.phot_pipeline) get_wavebin_series() (tshirt.pipeline.spec_pipeline.spec method) getData() (tshirt.pipeline.prep_images.prep method) getImg() (tshirt.pipeline.phot_pipeline.phot method)

H

hstwfc3_wavecal() (in module tshirt.pipeline.instrument_specific.hst_inst_funcs)

I

interactive_refSeries() (tshirt.pipeline.phot_pipeline.phot method)

inverse_wavecal() (tshirt.pipeline.spec_pipeline.spec method)

L

lbt_luci2_lincor() (in module tshirt.pipeline.prep_images)

M

make_const_R_grid() (in module tshirt.pipeline.spec_pipeline) make_constant_Rgrid() (tshirt.pipeline.spec_pipeline.spec method) make_drift_file() (tshirt.pipeline.phot_pipeline.phot method) make_filename_hdu() (tshirt.pipeline.phot_pipeline.phot method) make_gp() (in module tshirt.pipeline.instrument_specific.rowamp_sub) make_pipe_obj() (tshirt.pipeline.phot_pipeline.batchPhot method) (tshirt.pipeline.spec_pipeline.batch_spec method) make_wavebin_series() (tshirt.pipeline.spec_pipeline.spec method) makeMasterCals() (tshirt.pipeline.prep_images.prep method)

module tshirt.pipeline.analysis tshirt.pipeline.instrument_specific.hst_inst_funcs tshirt.pipeline.instrument_specific.jwst_inst_funcs tshirt.pipeline.instrument_specific.rowamp_sub tshirt.pipeline.phot_pipeline tshirt.pipeline.prep_images tshirt.pipeline.spec_pipeline tshirt.pipeline.utils

N

norm_spec() (tshirt.pipeline.spec_pipeline.spec method)

P

periodogram() (tshirt.pipeline.spec_pipeline.spec method) phot (class in tshirt.pipeline.phot_pipeline) phot_for_one_file() (tshirt.pipeline.phot_pipeline.phot method) plot_apsizes() (in module tshirt.pipeline.analysis) plot_dynamic_spec() (tshirt.pipeline.spec_pipeline.spec method) plot_flux_vs_pos() (tshirt.pipeline.phot_pipeline.phot method) plot_noise_spectrum() (tshirt.pipeline.spec_pipeline.spec method) plot_one_spec() (tshirt.pipeline.spec_pipeline.spec method)

plot_phot() (tshirt.pipeline.phot_pipeline.phot method) plot_wavebin_series() (tshirt.pipeline.spec_pipeline.spec method) poly_sub_phot() (tshirt.pipeline.phot_pipeline.phot method) prep (class in tshirt.pipeline.prep_images) prevPhot (class in tshirt.pipeline.phot_pipeline) print_noise_wavebin() (tshirt.pipeline.spec_pipeline.spec method) print_phot_statistics() (tshirt.pipeline.phot_pipeline.phot method) procSciFiles() (tshirt.pipeline.prep_images.prep method) profile_normalize() (tshirt.pipeline.spec_pipeline.spec method)

Q

quick_nirspec_prism() (in module tshirt.pipeline.instrument_specific.jwst_inst_funcs)

R

read_cov_weights() (tshirt.pipeline.spec_pipeline.spec method) read_profiles() (tshirt.pipeline.spec_pipeline.spec method) reduce_all() (in module tshirt.pipeline.prep_images) refcorrect_dynamic_spectra() (tshirt.pipeline.spec_pipeline.spec method) refSeries() (tshirt.pipeline.phot_pipeline.phot method) reset_phot() (tshirt.pipeline.phot_pipeline.phot method) return_phot_obj() (tshirt.pipeline.phot_pipeline.batchPhot method) (tshirt.pipeline.spec_pipeline.batch_spec method)

return_spec_obj() (tshirt.pipeline.spec_pipeline.batch_spec method) robust_poly() (in module tshirt.pipeline.utils) roll_pad() (in module tshirt.pipeline.utils) rowamp_sub_phot() (tshirt.pipeline.phot_pipeline.phot method) run_multiprocessing_phot() (in module tshirt.pipeline.phot_pipeline) run_one_phot_method() (in module tshirt.pipeline.phot_pipeline)

S

save_all_backsub() (tshirt.pipeline.spec_pipeline.spec method) save_centroids() (tshirt.pipeline.phot_pipeline.phot method) save_one_backsub() (tshirt.pipeline.spec_pipeline.spec method) save_phot() (tshirt.pipeline.phot_pipeline.phot method) saveRefSeries() (in module tshirt.pipeline.phot_pipeline) seeing_summary() (in module tshirt.pipeline.phot_pipeline) shift_centroids_from_other_file() (tshirt.pipeline.phot_pipeline.phot method) show_cutout() (tshirt.pipeline.phot_pipeline.phot method)

show_gp_psd() (in module tshirt.pipeline.instrument_specific.rowamp_sub) showCustSet() (tshirt.pipeline.phot_pipeline.phot method) showStamps() (tshirt.pipeline.phot_pipeline.phot method) showStarChoices() (tshirt.pipeline.phot_pipeline.phot method) (tshirt.pipeline.spec_pipeline.spec method) source_in_img() (tshirt.pipeline.phot_pipeline.phot method) spec (class in tshirt.pipeline.spec_pipeline) spec_for_one_file() (tshirt.pipeline.spec_pipeline.spec method)

T

test_roll() (in module tshirt.pipeline.utils) ts_grismc_sim() (in module tshirt.pipeline.instrument_specific.jwst_inst_funcs) ts_wavecal() (in module tshirt.pipeline.instrument_specific.jwst_inst_funcs) ts_wavecal_quick_nonlin() (in module tshirt.pipeline.instrument_specific.jwst_inst_funcs) tshirt.pipeline.analysis module tshirt.pipeline.instrument_specific.hst_inst_funcs module tshirt.pipeline.instrument_specific.jwst_inst_funcs module

tshirt.pipeline.instrument_specific.rowamp_sub module tshirt.pipeline.phot_pipeline module tshirt.pipeline.prep_images module tshirt.pipeline.spec_pipeline module tshirt.pipeline.utils module

W

wavebin_specFile() (tshirt.pipeline.spec_pipeline.spec method)

wavecal() (tshirt.pipeline.spec_pipeline.spec method)